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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_3205KEGG: pen:PSEEN0746 hypothetical protein. (873 aa)    
Predicted Functional Partners:
Veis_3203
TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein.
 
 
0.601
Veis_3204
Hypothetical protein.
       0.547
Veis_3718
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related.
 
   
 0.528
Veis_0261
KEGG: lin:lin1649 hypothetical protein.
  
     0.519
Veis_3673
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related.
 
   
 0.504
Veis_2428
PFAM: plasmid stabilization system; KEGG: xfa:XF2074 hypothetical protein.
  
     0.497
Veis_3675
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related.
 
   
 0.496
Veis_3716
Hypothetical protein; KEGG: reu:Reut_B5104 allergen V5/TPX-1 related.
 
   
 0.490
Veis_0004
TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: gsu:GSU1391 Fic family protein.
  
     0.448
Veis_2427
Transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: xac:XAC2429 hypothetical protein.
  
     0.432
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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