STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoDGalactonate dehydratase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate. (382 aa)    
Predicted Functional Partners:
Veis_3778
KEGG: rso:RSc2759 probable 2-dehydro-3-deoxygalactonokinase protein.
 
 
 0.986
Veis_0917
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bps:BPSS2072 mandelate racemase / muconate lactonizing enzyme.
  
  
0.926
Veis_3773
PFAM: KDPG and KHG aldolase; KEGG: rso:RSc2752 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase.
 
   
 0.924
Veis_2909
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bur:Bcep18194_B2837 mandelate racemase/muconate lactonizing enzyme.
  
  
 
0.920
Veis_3775
PFAM: inner-membrane translocator; KEGG: rso:RSc2756 probable L-arabinose transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.812
Veis_3774
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc2753 short chain dehydrogenase.
     
 0.776
Veis_3777
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc2758 probable L-arabinose-binding periplasmic (pbp) ABC transporter protein.
 
     0.711
araG
ABC transporter related; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
       0.701
Veis_3771
PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: reu:Reut_A1001 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal; Belongs to the GST superfamily.
     
 0.454
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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