STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_4966PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0720 ABC-type transporter, permease component: PepT family. (318 aa)    
Predicted Functional Partners:
Veis_4965
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B0719 ABC-type transporter, permease component: PepT family.
  
 0.959
Veis_0115
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component.
  
 0.828
Veis_0937
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component.
  
 0.826
Veis_3435
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1448 putative oligopeptide ABC transporter (permease).
  
 0.826
Veis_3850
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component.
  
 0.826
Veis_1970
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5439 ABC transporter, permease protein.
  
 0.825
Veis_3326
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0932 binding-protein-dependent transport systems inner membrane component.
  
 0.825
Veis_4964
PFAM: extracellular solute-binding protein, family 5; KEGG: rme:Rmet_4578 extracellular solute-binding protein, family 5.
 
 
 0.825
Veis_4119
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4026 dipeptide ABC transporter, permease protein.
  
 0.821
Veis_4724
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1445 binding-protein-dependent transport systems inner membrane component.
  
 0.821
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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