Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
S7S_01520 | S7S_02265 | Hypothetical protein; COG3083 Predicted hydrolase of alkaline phosphatase superfamily. | Lipopolysaccharide core heptose(I) kinase RfaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. | 0.454 |
S7S_01520 | S7S_04740 | Hypothetical protein; COG3083 Predicted hydrolase of alkaline phosphatase superfamily. | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | 0.497 |
S7S_01520 | S7S_13465 | Hypothetical protein; COG3083 Predicted hydrolase of alkaline phosphatase superfamily. | Hypothetical protein; COG4692 Predicted neuraminidase (sialidase). | 0.572 |
S7S_02265 | S7S_01520 | Lipopolysaccharide core heptose(I) kinase RfaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. | Hypothetical protein; COG3083 Predicted hydrolase of alkaline phosphatase superfamily. | 0.454 |
S7S_02265 | S7S_04740 | Lipopolysaccharide core heptose(I) kinase RfaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | 0.458 |
S7S_04735 | S7S_04740 | COG2969 Stringent starvation protein B. | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | 0.424 |
S7S_04740 | S7S_01520 | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | Hypothetical protein; COG3083 Predicted hydrolase of alkaline phosphatase superfamily. | 0.497 |
S7S_04740 | S7S_02265 | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | Lipopolysaccharide core heptose(I) kinase RfaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. | 0.458 |
S7S_04740 | S7S_04735 | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | COG2969 Stringent starvation protein B. | 0.424 |
S7S_04740 | S7S_13465 | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | Hypothetical protein; COG4692 Predicted neuraminidase (sialidase). | 0.703 |
S7S_13465 | S7S_01520 | Hypothetical protein; COG4692 Predicted neuraminidase (sialidase). | Hypothetical protein; COG3083 Predicted hydrolase of alkaline phosphatase superfamily. | 0.572 |
S7S_13465 | S7S_04740 | Hypothetical protein; COG4692 Predicted neuraminidase (sialidase). | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily. | 0.703 |