Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S7S_08060Metal dependent phosphohydrolase; COG2206 HD-GYP domain. (405 aa)    
Predicted Functional Partners:
S7S_08825
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
   
 0.832
S7S_05890
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
   
 0.786
S7S_11280
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
 0.773
S7S_05885
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
 0.764
S7S_15850
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
 
 
 0.759
S7S_15535
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
   
 0.753
S7S_13470
PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
   
 0.744
S7S_07420
Diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain.
 
   
 0.711
S7S_13030
Hypothetical protein; COG2199 FOG: GGDEF domain.
  
   
 0.711
S7S_15330
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
 
   
 0.710
Your Current Organism:
Alcanivorax pacificus
NCBI taxonomy Id: 391936
Other names: A. pacificus W11-5, Alcanivorax pacificus W11-5, Alcanivorax sp. W11-5
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