Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S7S_08075Hypothetical protein. (350 aa)    
Predicted Functional Partners:
S7S_08080
COG0708 Exonuclease III.
       0.837
S7S_10325
COG4399 Uncharacterized protein conserved in bacteria.
  
     0.696
S7S_08085
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.693
S7S_08090
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.654
S7S_08070
Sensory box protein/response regulator; COG0784 FOG: CheY-like receiver.
       0.628
S7S_08065
Hypothetical protein.
       0.624
S7S_09645
Hypothetical protein.
  
     0.596
S7S_08870
Methyltransferase; COG0220 Predicted S-adenosylmethionine-dependent methyltransferase.
  
     0.554
S7S_14090
COG3212 Predicted membrane protein.
  
     0.534
S7S_01820
Polyhydroxyalkanoate synthase; COG3243 Poly(3-hydroxyalkanoate) synthetase.
  
    0.520
Your Current Organism:
Alcanivorax pacificus
NCBI taxonomy Id: 391936
Other names: A. pacificus W11-5, Alcanivorax pacificus W11-5, Alcanivorax sp. W11-5
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