STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_02224Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid. (412 aa)    
Predicted Functional Partners:
NA2_03282
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.897
NA2_18500
COG1004 Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.839
NA2_03267
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.568
NA2_12448
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.568
NA2_02229
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.550
gatC
glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
   
    0.521
NA2_20158
COG1210 UDP-glucose pyrophosphorylase.
    
 0.461
NA2_18161
COG0673 Predicted dehydrogenases and related proteins.
  
  
 0.411
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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