STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_08029Arylmalonate decarboxylase; COG3473 Maleate cis-trans isomerase. (246 aa)    
Predicted Functional Partners:
NA2_08024
Mandelate racemase/muconate lactonizing protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.800
NA2_08009
TRAP dicarboxylate transporter subunit DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
       0.773
NA2_08014
Tripartite AtP-independent periplasmic transporter subunit DctQ; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.773
NA2_08019
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
       0.773
NA2_13135
COG3473 Maleate cis-trans isomerase.
  
  
 
0.666
NA2_08034
Hydantoinase/oxoprolinase; COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
       0.572
NA2_04107
Isochorismatase hydrolase; COG1335 Amidases related to nicotinamidase.
    
 0.551
sdhA
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.542
NA2_08004
COG1802 Transcriptional regulators.
       0.537
NA2_14447
Benzoate 1,2-dioxygenase subunit alpha; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
     0.512
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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