Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NA2_08089COG1396 Predicted transcriptional regulators. (137 aa)    
Predicted Functional Partners:
NA2_18821
Hypothetical protein.
  
     0.702
NA2_17856
Hypothetical protein.
  
     0.675
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
     
 0.673
NA2_08094
COG0192 S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.
    
  0.664
NA2_14312
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.662
NA2_19066
COG0642 Signal transduction histidine kinase.
  
     0.657
NA2_02954
HAD family hydrolase; COG0647 Predicted sugar phosphatases of the HAD superfamily.
  
  
  0.656
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.647
holA
COG1466 DNA polymerase III, delta subunit.
  
     0.647
NA2_16133
Hypothetical protein.
  
     0.624
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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