STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_08641COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (430 aa)    
Predicted Functional Partners:
NA2_08591
TRAP dicarboxylate transporter- DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
 
  0.925
NA2_08636
Hypothetical protein.
 
  0.881
NA2_08631
TRAP dicarboxylate transporter subunit DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.852
NA2_00840
TRAP transporter solute receptor; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.771
NA2_00845
TRAP transporter solute receptor; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.767
NA2_05261
TRAP transporter solute receptor; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.766
NA2_02114
TRAP dicarboxylate transporter subunit DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.740
NA2_08646
Amidohydrolase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.701
NA2_14352
Extracellular solute-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.659
NA2_16982
TRAP dicarboxylate transporter subunit DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.633
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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