STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_11954L-fucose isomerase-like, C-terminal domain-containing protein; Catalyzes the conversion of L-arabinose to L-ribulose. (460 aa)    
Predicted Functional Partners:
NA2_02529
Carbohydrate kinase; COG1070 Sugar (pentulose and hexulose) kinases; Belongs to the FGGY kinase family.
 
 
 0.869
NA2_11949
COG3684 Tagatose-1,6-bisphosphate aldolase.
 
     0.830
NA2_11959
COG0673 Predicted dehydrogenases and related proteins.
       0.782
NA2_11944
PfkB domain-containing protein; COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.
 
  
  0.710
NA2_18365
Putative sugar ABC transporter periplasmic sugar-binding protein ABC transporter; COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.586
NA2_18390
COG0673 Predicted dehydrogenases and related proteins.
  
     0.517
NA2_11939
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 0.516
NA2_12970
COG0524 Sugar kinases, ribokinase family.
 
  
  0.494
NA2_12995
Transcriptional regulatory protein; COG1940 Transcriptional regulator/sugar kinase.
 
  
 0.459
NA2_08606
Decarboxylase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 
 0.419
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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