STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_13170Serine-type D-Ala-D-Ala carboxypeptidase; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (392 aa)    
Predicted Functional Partners:
NA2_04871
Peptidoglycan-binding domain 1 protein; COG1196 Chromosome segregation ATPases.
  
 
 0.728
NA2_00430
Penicillin-binding protein, transpeptidase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.661
NA2_19196
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.652
NA2_18645
COG5009 Membrane carboxypeptidase/penicillin-binding protein.
     
 0.651
NA2_06632
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.649
NA2_04191
COG0744 Membrane carboxypeptidase (penicillin-binding protein).
   
 
 0.630
NA2_05583
Penicillin-binding protein; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
   
 
 0.630
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.553
NA2_13180
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
       0.553
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.551
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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