Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NA2_00110 | NA2_14382 | NA2_00110 | NA2_14382 | COG2124 Cytochrome P450. | COG0633 Ferredoxin. | 0.922 |
NA2_03042 | NA2_14382 | NA2_03042 | NA2_14382 | COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). | COG0633 Ferredoxin. | 0.788 |
NA2_03042 | nuoA | NA2_03042 | NA2_03107 | COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). | NADH:ubiquinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. | 0.999 |
NA2_03042 | nuoD | NA2_03042 | NA2_03087 | COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). | NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.999 |
NA2_03042 | nuoI | NA2_03042 | NA2_03062 | COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). | NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.999 |
NA2_07502 | NA2_14377 | NA2_07502 | NA2_14377 | Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. | COG0492 Thioredoxin reductase. | 0.424 |
NA2_07502 | NA2_14382 | NA2_07502 | NA2_14382 | Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. | COG0633 Ferredoxin. | 0.957 |
NA2_07502 | NA2_18680 | NA2_07502 | NA2_18680 | Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. | Nitrogenase cofactor synthesis protein nifS; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. | 0.999 |
NA2_07502 | NA2_18710 | NA2_07502 | NA2_18710 | Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. | FeS assembly scaffold SufA; Belongs to the HesB/IscA family. | 0.956 |
NA2_14377 | NA2_07502 | NA2_14377 | NA2_07502 | COG0492 Thioredoxin reductase. | Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. | 0.424 |
NA2_14377 | NA2_14382 | NA2_14377 | NA2_14382 | COG0492 Thioredoxin reductase. | COG0633 Ferredoxin. | 0.942 |
NA2_14377 | NA2_14387 | NA2_14377 | NA2_14387 | COG0492 Thioredoxin reductase. | 4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.815 |
NA2_14377 | NA2_18680 | NA2_14377 | NA2_18680 | COG0492 Thioredoxin reductase. | Nitrogenase cofactor synthesis protein nifS; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. | 0.578 |
NA2_14377 | nuoI | NA2_14377 | NA2_03062 | COG0492 Thioredoxin reductase. | NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.588 |
NA2_14382 | NA2_00110 | NA2_14382 | NA2_00110 | COG0633 Ferredoxin. | COG2124 Cytochrome P450. | 0.922 |
NA2_14382 | NA2_03042 | NA2_14382 | NA2_03042 | COG0633 Ferredoxin. | COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). | 0.788 |
NA2_14382 | NA2_07502 | NA2_14382 | NA2_07502 | COG0633 Ferredoxin. | Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. | 0.957 |
NA2_14382 | NA2_14377 | NA2_14382 | NA2_14377 | COG0633 Ferredoxin. | COG0492 Thioredoxin reductase. | 0.942 |
NA2_14382 | NA2_14387 | NA2_14382 | NA2_14387 | COG0633 Ferredoxin. | 4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.781 |
NA2_14382 | NA2_18680 | NA2_14382 | NA2_18680 | COG0633 Ferredoxin. | Nitrogenase cofactor synthesis protein nifS; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. | 0.905 |
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