STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_16652Hypothetical protein; COG0520 Selenocysteine lyase. (482 aa)    
Predicted Functional Partners:
NA2_07502
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.961
NA2_13365
Endonuclease/exonuclease/phosphatase; COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component.
    
   0.843
NA2_16657
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
 
     0.802
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
 
      0.778
NA2_18690
ABC transporter ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.765
NA2_07262
Molybdopterin molybdochelatase / molybdenum cofactor cytidylyltransferase; COG0303 Molybdopterin biosynthesis enzyme.
    
 0.745
NA2_18685
Cysteine desulfurase activator complex subunit SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.719
NA2_18695
Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.712
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.703
NA2_05623
COG2166 SufE protein probably involved in Fe-S center assembly.
 
 0.689
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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