STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NA2_20068Conjugation TrbI family protein; COG2948 Type IV secretory pathway, VirB10 components. (120 aa)    
Predicted Functional Partners:
NA2_20073
Hypothetical protein; COG5639 Uncharacterized conserved small protein.
 
   
 0.929
NA2_08274
COG4962 Flp pilus assembly protein, ATPase CpaF.
    
 0.710
NA2_16582
Nodulation protein NolW; COG1450 Type II secretory pathway, component PulD.
  
    0.646
NA2_20123
Hypothetical protein; COG5572 Predicted integral membrane protein.
   
    0.614
NA2_16497
Flagellar biosynthetic protein; COG4792 Type III secretory pathway, component EscU.
   
    0.580
NA2_18745
Fimbrial biogenesis outer membrane usher protein; COG3188 P pilus assembly protein, porin PapC.
   
    0.569
NA2_16003
Outer membrane autotransporter; COG1404 Subtilisin-like serine proteases.
   
    0.532
NA2_16537
Flagellar biosynthetic protein fliQ.
   
    0.517
topA
DNA topoisomerase I subunit omega; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus rem [...]
     
 0.451
NA2_20118
COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
   
    0.418
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.