Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NA2_20719Diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (451 aa)    
Predicted Functional Partners:
NA2_05958
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain.
 
0.908
NA2_10873
COG0642 Signal transduction histidine kinase.
 0.846
NA2_11455
PAS sensor protein; COG0642 Signal transduction histidine kinase.
 0.835
NA2_15152
Diguanylate phosphodiesterase; COG2200 FOG: EAL domain.
 
 
 0.819
NA2_17222
Periplasmic sensor hybrid histidine kinase; COG0591 Na+/proline symporter.
  
 0.818
NA2_18240
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
  
  0.803
NA2_21003
Multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA; COG0642 Signal transduction histidine kinase.
  
 0.756
NA2_04766
Two-component sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
 
 0.707
NA2_10053
Ammonium transporter; COG0004 Ammonia permease.
 
      0.609
NA2_08269
COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
   
    0.548
Your Current Organism:
Nitratireductor pacificus
NCBI taxonomy Id: 391937
Other names: N. pacificus pht-3B, Nitratireductor pacificus pht-3B, Nitratireductor sp. pht-3B
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