STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000969605_00546Unannotated protein. (456 aa)    
Predicted Functional Partners:
GCA_000969605_00545
Unannotated protein.
 
 0.979
GCA_000969605_01755
Unannotated protein.
  
 0.972
GCA_000969605_03800
Unannotated protein.
   
 0.963
GCA_000969605_01950
Unannotated protein.
   
 0.960
GCA_000969605_01692
Unannotated protein.
   
 0.944
GCA_000969605_03390
Unannotated protein.
 
 0.942
GCA_000969605_03530
Unannotated protein.
   
 0.938
GCA_000969605_04313
Unannotated protein.
   
 0.938
GCA_000969605_03076
Unannotated protein.
  
 0.932
GCA_000969605_04599
Unannotated protein.
   
 0.931
Your Current Organism:
Aquincola tertiaricarbonis
NCBI taxonomy Id: 391953
Other names: A. tertiaricarbonis, Aquincola tertiaricarbonis Lechner et al. 2007, CIP 109243, DSM 18512, Ideonella sp. L108, strain L10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.