STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU93943.1ComEC/Rec2-related protein. (565 aa)    
Predicted Functional Partners:
SFU74923.1
DNA processing protein.
 
  
 0.883
SFV07911.1
comF family protein.
 
  
 0.851
SFU93966.1
Competence protein ComEA.
  
  
 0.843
SFU93953.1
Transglutaminase-like superfamily protein.
       0.817
SFU89273.1
Leader peptidase (prepilin peptidase) / N-methyltransferase/leader peptidase (prepilin peptidase).
  
  
 0.798
SFU89595.1
General secretion pathway protein G.
   
  
 0.789
SFU89301.1
Type IV pilus assembly protein PilC.
   
  
 0.781
SFU89581.1
Type II secretory pathway, component PulF.
   
  
 0.781
SFU74841.1
Magnesium chelatase family protein.
 
  
 0.751
SFU72032.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.735
Your Current Organism:
Alicyclobacillus macrosporangiidus
NCBI taxonomy Id: 392015
Other names: A. macrosporangiidus, Alicyclobacillus macrosporangiidus Goto et al. 2007, Alicyclobacillus sp. 5A239-2O-A, DSM 17980, IAM 15370, JCM 21814, strain 5-A239-2O-A
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