STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV09800.1RNA polymerase sigma-70 factor, ECF subfamily. (307 aa)    
Predicted Functional Partners:
SFV09807.1
Hypothetical protein.
       0.773
SFU58918.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
SFV06959.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.753
SFU87842.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.745
SFU60319.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.733
SFU36460.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.725
SFU59607.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.712
SFU58789.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.680
SFV09786.1
DinB superfamily protein.
       0.610
SFV09793.1
Hypothetical protein.
       0.610
Your Current Organism:
Alicyclobacillus macrosporangiidus
NCBI taxonomy Id: 392015
Other names: A. macrosporangiidus, Alicyclobacillus macrosporangiidus Goto et al. 2007, Alicyclobacillus sp. 5A239-2O-A, DSM 17980, IAM 15370, JCM 21814, strain 5-A239-2O-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.