STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV10243.1HTH-like domain-containing protein. (58 aa)    
Predicted Functional Partners:
SFV10238.1
Integrase core domain-containing protein.
 
     0.908
SFV10249.1
Transposase and inactivated derivatives.
 
    0.873
SFV09748.1
Transposase and inactivated derivatives.
  
    0.782
SFU93953.1
Transglutaminase-like superfamily protein.
  
     0.458
SFU36002.1
Tetraprenyl-beta-curcumene synthase.
  
     0.453
SFU77071.1
Pyruvate ferredoxin oxidoreductase alpha subunit.
  
  
  0.413
Your Current Organism:
Alicyclobacillus macrosporangiidus
NCBI taxonomy Id: 392015
Other names: A. macrosporangiidus, Alicyclobacillus macrosporangiidus Goto et al. 2007, Alicyclobacillus sp. 5A239-2O-A, DSM 17980, IAM 15370, JCM 21814, strain 5-A239-2O-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.