STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL25677.1Carboxylesterase. (269 aa)    
Predicted Functional Partners:
SDM55956.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
   
 0.896
SDM22744.1
Long-chain acyl-CoA synthetase.
   
 0.887
SDL41233.1
CDP-diacylglycerol---serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 0.840
rnr
RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.778
SDM12900.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
   
 0.708
SDL25596.1
Long-chain acyl-CoA synthetase.
    
 0.696
SDL93352.1
fatty-acyl-CoA synthase.
   
 0.690
SDM23950.1
V/A-type H+-transporting ATPase subunit D.
   
 
  0.678
SDL80112.1
Potassium and/or sodium efflux P-type ATPase.
    
 0.639
SDM30136.1
Plasma-membrane calcium-translocating P-type ATPase.
    
 0.639
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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