STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL31085.1Uncharacterized membrane protein YqaE, homolog of Blt101, UPF0057 family. (52 aa)    
Predicted Functional Partners:
SDM95651.1
Cytochrome c5.
    
   0.843
SDL31017.1
4Fe-4S binding domain-containing protein.
   
   0.781
SDL31119.1
Hypothetical protein.
       0.678
SDL31162.1
Protein of unknown function.
       0.673
SDL30978.1
Uncharacterized conserved protein, DUF362 family.
       0.561
SDL30940.1
Osmoprotectant transport system substrate-binding protein.
  
    0.554
SDL38126.1
Uncharacterized conserved protein, DUF362 family.
    
   0.521
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
   0.521
SDM02765.1
4Fe-4S dicluster domain-containing protein.
    
   0.521
SDM05428.1
4Fe-4S dicluster domain-containing protein.
    
   0.521
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.