Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL41640.1 | SDL41691.1 | SAMN05660860_00576 | SAMN05660860_00577 | Tfp pilus assembly protein PilF. | Hypothetical protein. | 0.798 |
SDL41640.1 | SDL41732.1 | SAMN05660860_00576 | SAMN05660860_00578 | Tfp pilus assembly protein PilF. | DHHA1 domain-containing protein. | 0.726 |
SDL41640.1 | SDL41773.1 | SAMN05660860_00576 | SAMN05660860_00579 | Tfp pilus assembly protein PilF. | N-acetylmuramoyl-L-alanine amidase. | 0.620 |
SDL41640.1 | SDL41861.1 | SAMN05660860_00576 | SAMN05660860_00581 | Tfp pilus assembly protein PilF. | XTP/dITP diphosphohydrolase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.682 |
SDL41640.1 | rph | SAMN05660860_00576 | SAMN05660860_00580 | Tfp pilus assembly protein PilF. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.505 |
SDL41691.1 | SDL41640.1 | SAMN05660860_00577 | SAMN05660860_00576 | Hypothetical protein. | Tfp pilus assembly protein PilF. | 0.798 |
SDL41691.1 | SDL41732.1 | SAMN05660860_00577 | SAMN05660860_00578 | Hypothetical protein. | DHHA1 domain-containing protein. | 0.796 |
SDL41691.1 | SDL41773.1 | SAMN05660860_00577 | SAMN05660860_00579 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.526 |
SDL41691.1 | SDL41861.1 | SAMN05660860_00577 | SAMN05660860_00581 | Hypothetical protein. | XTP/dITP diphosphohydrolase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.520 |
SDL41691.1 | rph | SAMN05660860_00577 | SAMN05660860_00580 | Hypothetical protein. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.522 |
SDL41732.1 | SDL41640.1 | SAMN05660860_00578 | SAMN05660860_00576 | DHHA1 domain-containing protein. | Tfp pilus assembly protein PilF. | 0.726 |
SDL41732.1 | SDL41691.1 | SAMN05660860_00578 | SAMN05660860_00577 | DHHA1 domain-containing protein. | Hypothetical protein. | 0.796 |
SDL41732.1 | SDL41773.1 | SAMN05660860_00578 | SAMN05660860_00579 | DHHA1 domain-containing protein. | N-acetylmuramoyl-L-alanine amidase. | 0.615 |
SDL41732.1 | SDL41861.1 | SAMN05660860_00578 | SAMN05660860_00581 | DHHA1 domain-containing protein. | XTP/dITP diphosphohydrolase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.591 |
SDL41732.1 | SDL92372.1 | SAMN05660860_00578 | SAMN05660860_01445 | DHHA1 domain-containing protein. | Hypothetical protein. | 0.715 |
SDL41732.1 | SDL93149.1 | SAMN05660860_00578 | SAMN05660860_01464 | DHHA1 domain-containing protein. | Hypothetical protein. | 0.618 |
SDL41732.1 | SDM33582.1 | SAMN05660860_00578 | SAMN05660860_02335 | DHHA1 domain-containing protein. | Hypothetical protein. | 0.552 |
SDL41732.1 | cysN | SAMN05660860_00578 | SAMN05660860_02754 | DHHA1 domain-containing protein. | Bifunctional enzyme CysN/CysC; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.720 |
SDL41732.1 | rbfA | SAMN05660860_00578 | SAMN05660860_00799 | DHHA1 domain-containing protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.779 |
SDL41732.1 | rph | SAMN05660860_00578 | SAMN05660860_00580 | DHHA1 domain-containing protein. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.610 |
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