Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL28046.1 | SDL51838.1 | SAMN05660860_00224 | SAMN05660860_00832 | Sulfate permease, SulP family. | DNA repair exonuclease SbcCD nuclease subunit. | 0.910 |
SDL28046.1 | SDM21659.1 | SAMN05660860_00224 | SAMN05660860_02119 | Sulfate permease, SulP family. | Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.923 |
SDL28046.1 | SDM34578.1 | SAMN05660860_00224 | SAMN05660860_02364 | Sulfate permease, SulP family. | Hypothetical protein. | 0.932 |
SDL35068.1 | SDL35109.1 | SAMN05660860_00407 | SAMN05660860_00408 | RecQ zinc-binding. | ATP-dependent DNA helicase, RecQ family. | 0.980 |
SDL35068.1 | SDL41162.1 | SAMN05660860_00407 | SAMN05660860_00564 | RecQ zinc-binding. | ATP-dependent DNA helicase RecQ. | 0.763 |
SDL35068.1 | SDL51838.1 | SAMN05660860_00407 | SAMN05660860_00832 | RecQ zinc-binding. | DNA repair exonuclease SbcCD nuclease subunit. | 0.960 |
SDL35068.1 | SDL82212.1 | SAMN05660860_00407 | SAMN05660860_01364 | RecQ zinc-binding. | ATP-dependent DNA helicase DinG. | 0.806 |
SDL35068.1 | SDM34578.1 | SAMN05660860_00407 | SAMN05660860_02364 | RecQ zinc-binding. | Hypothetical protein. | 0.522 |
SDL35068.1 | polA | SAMN05660860_00407 | SAMN05660860_02315 | RecQ zinc-binding. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.989 |
SDL35068.1 | recA | SAMN05660860_00407 | SAMN05660860_00109 | RecQ zinc-binding. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.977 |
SDL35109.1 | SDL35068.1 | SAMN05660860_00408 | SAMN05660860_00407 | ATP-dependent DNA helicase, RecQ family. | RecQ zinc-binding. | 0.980 |
SDL35109.1 | SDL51838.1 | SAMN05660860_00408 | SAMN05660860_00832 | ATP-dependent DNA helicase, RecQ family. | DNA repair exonuclease SbcCD nuclease subunit. | 0.960 |
SDL35109.1 | SDL82212.1 | SAMN05660860_00408 | SAMN05660860_01364 | ATP-dependent DNA helicase, RecQ family. | ATP-dependent DNA helicase DinG. | 0.808 |
SDL35109.1 | SDM34578.1 | SAMN05660860_00408 | SAMN05660860_02364 | ATP-dependent DNA helicase, RecQ family. | Hypothetical protein. | 0.522 |
SDL35109.1 | polA | SAMN05660860_00408 | SAMN05660860_02315 | ATP-dependent DNA helicase, RecQ family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.989 |
SDL35109.1 | recA | SAMN05660860_00408 | SAMN05660860_00109 | ATP-dependent DNA helicase, RecQ family. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.978 |
SDL41162.1 | SDL35068.1 | SAMN05660860_00564 | SAMN05660860_00407 | ATP-dependent DNA helicase RecQ. | RecQ zinc-binding. | 0.763 |
SDL41162.1 | SDL51838.1 | SAMN05660860_00564 | SAMN05660860_00832 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD nuclease subunit. | 0.960 |
SDL41162.1 | SDL82212.1 | SAMN05660860_00564 | SAMN05660860_01364 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase DinG. | 0.808 |
SDL41162.1 | SDM34578.1 | SAMN05660860_00564 | SAMN05660860_02364 | ATP-dependent DNA helicase RecQ. | Hypothetical protein. | 0.522 |
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