Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM03797.1 | SDM03829.1 | SAMN05660860_01757 | SAMN05660860_01758 | Aspartate aminotransferase. | Chorismate mutase. | 0.984 |
SDM03797.1 | SDM03869.1 | SAMN05660860_01757 | SAMN05660860_01759 | Aspartate aminotransferase. | Prephenate dehydrogenase. | 0.948 |
SDM03797.1 | hisC | SAMN05660860_01757 | SAMN05660860_01046 | Aspartate aminotransferase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.909 |
SDM03829.1 | SDM03797.1 | SAMN05660860_01758 | SAMN05660860_01757 | Chorismate mutase. | Aspartate aminotransferase. | 0.984 |
SDM03829.1 | SDM03869.1 | SAMN05660860_01758 | SAMN05660860_01759 | Chorismate mutase. | Prephenate dehydrogenase. | 0.995 |
SDM03829.1 | hisA | SAMN05660860_01758 | SAMN05660860_02770 | Chorismate mutase. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. | 0.541 |
SDM03829.1 | hisB | SAMN05660860_01758 | SAMN05660860_02768 | Chorismate mutase. | Imidazoleglycerol-phosphate dehydratase. | 0.864 |
SDM03829.1 | hisC | SAMN05660860_01758 | SAMN05660860_01046 | Chorismate mutase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.960 |
SDM03829.1 | hisD | SAMN05660860_01758 | SAMN05660860_02767 | Chorismate mutase. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.473 |
SDM03829.1 | hisF | SAMN05660860_01758 | SAMN05660860_02771 | Chorismate mutase. | Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.578 |
SDM03829.1 | hisG | SAMN05660860_01758 | SAMN05660860_02766 | Chorismate mutase. | ATP phosphoribosyltransferase (homohexameric); Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.564 |
SDM03829.1 | hisH | SAMN05660860_01758 | SAMN05660860_02769 | Chorismate mutase. | Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | 0.450 |
SDM03829.1 | hisI | SAMN05660860_01758 | SAMN05660860_02772 | Chorismate mutase. | phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family. | 0.557 |
SDM03869.1 | SDM03797.1 | SAMN05660860_01759 | SAMN05660860_01757 | Prephenate dehydrogenase. | Aspartate aminotransferase. | 0.948 |
SDM03869.1 | SDM03829.1 | SAMN05660860_01759 | SAMN05660860_01758 | Prephenate dehydrogenase. | Chorismate mutase. | 0.995 |
SDM03869.1 | hisA | SAMN05660860_01759 | SAMN05660860_02770 | Prephenate dehydrogenase. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. | 0.409 |
SDM03869.1 | hisB | SAMN05660860_01759 | SAMN05660860_02768 | Prephenate dehydrogenase. | Imidazoleglycerol-phosphate dehydratase. | 0.480 |
SDM03869.1 | hisC | SAMN05660860_01759 | SAMN05660860_01046 | Prephenate dehydrogenase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.984 |
SDM03869.1 | hisG | SAMN05660860_01759 | SAMN05660860_02766 | Prephenate dehydrogenase. | ATP phosphoribosyltransferase (homohexameric); Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.418 |
hisA | SDM03829.1 | SAMN05660860_02770 | SAMN05660860_01758 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. | Chorismate mutase. | 0.541 |
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