STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL98722.1O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain. (170 aa)    
Predicted Functional Partners:
SDM45367.1
ADP-ribosyl-[dinitrogen reductase] hydrolase.
    
 0.785
SDL48899.1
Recombination protein MgsA.
      0.719
cmk
Cytidylate kinase.
 
      0.639
SDM44266.1
Rhodanese-related sulfurtransferase.
  
 0.639
SDL98680.1
Hypothetical protein.
       0.556
SDL98646.1
Menaquinone-dependent protoporphyrinogen oxidase.
       0.542
SDM47840.1
Acetoin utilization deacetylase AcuC.
    
  0.471
SDM66764.1
Acetoin utilization protein AcuC.
    
  0.471
SDM58718.1
Nucleotidyltransferase.
  
 
  0.450
SDM92675.1
Metallo-beta-lactamase family protein.
  
 
 0.407
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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