Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL74328.1 | SDM36832.1 | SAMN05660860_01170 | SAMN05660860_02422 | Hypothetical protein. | Hypothetical protein. | 0.610 |
SDL80546.1 | SDM36832.1 | SAMN05660860_01324 | SAMN05660860_02422 | Nucleotide-binding universal stress protein, UspA family. | Hypothetical protein. | 0.402 |
SDM36794.1 | SDM36832.1 | SAMN05660860_02421 | SAMN05660860_02422 | Protein of unknown function. | Hypothetical protein. | 0.658 |
SDM36794.1 | SDM36889.1 | SAMN05660860_02421 | SAMN05660860_02423 | Protein of unknown function. | Protein of unknown function. | 0.597 |
SDM36832.1 | SDL74328.1 | SAMN05660860_02422 | SAMN05660860_01170 | Hypothetical protein. | Hypothetical protein. | 0.610 |
SDM36832.1 | SDL80546.1 | SAMN05660860_02422 | SAMN05660860_01324 | Hypothetical protein. | Nucleotide-binding universal stress protein, UspA family. | 0.402 |
SDM36832.1 | SDM36794.1 | SAMN05660860_02422 | SAMN05660860_02421 | Hypothetical protein. | Protein of unknown function. | 0.658 |
SDM36832.1 | SDM36889.1 | SAMN05660860_02422 | SAMN05660860_02423 | Hypothetical protein. | Protein of unknown function. | 0.814 |
SDM36832.1 | infA | SAMN05660860_02422 | SAMN05660860_02008 | Hypothetical protein. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.485 |
SDM36832.1 | rimP | SAMN05660860_02422 | SAMN05660860_00794 | Hypothetical protein. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.485 |
SDM36889.1 | SDM36794.1 | SAMN05660860_02423 | SAMN05660860_02421 | Protein of unknown function. | Protein of unknown function. | 0.597 |
SDM36889.1 | SDM36832.1 | SAMN05660860_02423 | SAMN05660860_02422 | Protein of unknown function. | Hypothetical protein. | 0.814 |
infA | SDM36832.1 | SAMN05660860_02008 | SAMN05660860_02422 | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Hypothetical protein. | 0.485 |
infA | rimP | SAMN05660860_02008 | SAMN05660860_00794 | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.553 |
rimP | SDM36832.1 | SAMN05660860_00794 | SAMN05660860_02422 | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | Hypothetical protein. | 0.485 |
rimP | infA | SAMN05660860_00794 | SAMN05660860_02008 | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.553 |