STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM63026.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
SDM62900.1
triphosphoribosyl-dephospho-CoA synthase.
 
     0.852
SDM62928.1
holo-ACP synthase.
 
     0.840
SDM63061.1
Citrate lyase subunit gamma (acyl carrier protein); Covalent carrier of the coenzyme of citrate lyase.
 
     0.837
SDM63093.1
[citrate (pro-3S)-lyase] ligase.
 
     0.835
SDM62980.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
     0.834
SDM62954.1
Citrate lyase subunit alpha / citrate CoA-transferase.
 
     0.828
fabH-2
3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.553
SDL98680.1
Hypothetical protein.
  
     0.497
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.487
SDL44977.1
O-Antigen ligase.
  
     0.464
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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