STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM70955.1Four helix bundle protein. (116 aa)    
Predicted Functional Partners:
SDM67235.1
General secretion pathway protein K.
  
 
 0.865
SDM92601.1
Four helix bundle protein.
  
     0.774
SDL25346.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 0.712
SDL44674.1
Type IV pilus assembly protein PilB.
  
 0.693
SDL83803.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 0.693
SDL95495.1
Type IV pilus assembly protein PilB.
  
 0.693
SDL97409.1
Type II secretion system (T2SS), protein E, N-terminal domain.
  
 0.693
SDM04443.1
Type IV pilus assembly protein PilB.
  
 0.693
SDM67461.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.693
SDL43046.1
Competence protein ComEC.
  
  
 0.652
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.