Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL65420.1 | SDM71840.1 | SAMN05660860_00928 | SAMN05660860_03041 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Precorrin-2 dehydrogenase. | 0.406 |
SDL65420.1 | hemA | SAMN05660860_00928 | SAMN05660860_03039 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.683 |
SDL68103.1 | SDM75029.1 | SAMN05660860_00995 | SAMN05660860_03115 | Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Flagellar protein FlaG. | 0.862 |
SDL68103.1 | hemA | SAMN05660860_00995 | SAMN05660860_03039 | Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.786 |
SDM71606.1 | SDM71660.1 | SAMN05660860_03036 | SAMN05660860_03037 | Porphobilinogen synthase; Belongs to the ALAD family. | uroporphyrinogen-III synthase. | 0.999 |
SDM71606.1 | SDM71796.1 | SAMN05660860_03036 | SAMN05660860_03040 | Porphobilinogen synthase; Belongs to the ALAD family. | Cytochrome c-type biogenesis protein CcsB. | 0.555 |
SDM71606.1 | SDM71840.1 | SAMN05660860_03036 | SAMN05660860_03041 | Porphobilinogen synthase; Belongs to the ALAD family. | Precorrin-2 dehydrogenase. | 0.826 |
SDM71606.1 | gltX | SAMN05660860_03036 | SAMN05660860_00878 | Porphobilinogen synthase; Belongs to the ALAD family. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.422 |
SDM71606.1 | hemA | SAMN05660860_03036 | SAMN05660860_03039 | Porphobilinogen synthase; Belongs to the ALAD family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.921 |
SDM71606.1 | hemC | SAMN05660860_03036 | SAMN05660860_03038 | Porphobilinogen synthase; Belongs to the ALAD family. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.999 |
SDM71606.1 | hemL | SAMN05660860_03036 | SAMN05660860_01076 | Porphobilinogen synthase; Belongs to the ALAD family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.998 |
SDM71660.1 | SDM71606.1 | SAMN05660860_03037 | SAMN05660860_03036 | uroporphyrinogen-III synthase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.999 |
SDM71660.1 | SDM71796.1 | SAMN05660860_03037 | SAMN05660860_03040 | uroporphyrinogen-III synthase. | Cytochrome c-type biogenesis protein CcsB. | 0.888 |
SDM71660.1 | SDM71840.1 | SAMN05660860_03037 | SAMN05660860_03041 | uroporphyrinogen-III synthase. | Precorrin-2 dehydrogenase. | 0.998 |
SDM71660.1 | gltX | SAMN05660860_03037 | SAMN05660860_00878 | uroporphyrinogen-III synthase. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.441 |
SDM71660.1 | hemA | SAMN05660860_03037 | SAMN05660860_03039 | uroporphyrinogen-III synthase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.981 |
SDM71660.1 | hemC | SAMN05660860_03037 | SAMN05660860_03038 | uroporphyrinogen-III synthase. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.999 |
SDM71660.1 | hemL | SAMN05660860_03037 | SAMN05660860_01076 | uroporphyrinogen-III synthase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.979 |
SDM71796.1 | SDM71606.1 | SAMN05660860_03040 | SAMN05660860_03036 | Cytochrome c-type biogenesis protein CcsB. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.555 |
SDM71796.1 | SDM71660.1 | SAMN05660860_03040 | SAMN05660860_03037 | Cytochrome c-type biogenesis protein CcsB. | uroporphyrinogen-III synthase. | 0.888 |
page 1 of 3