STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM79792.1Ni/Fe-hydrogenase 2 integral membrane subunit HybB. (418 aa)    
Predicted Functional Partners:
SDM79828.1
Formate dehydrogenase iron-sulfur subunit.
 0.998
SDM79870.1
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.994
SDM53289.1
Fe-S-cluster-containing dehydrogenase component.
 0.989
SDM79916.1
Formate dehydrogenase major subunit.
 
 0.984
SDL39193.1
Cytochrome c oxidase subunit 2.
   
 0.967
SDM79532.1
Formate dehydrogenase (quinone-dependent) iron-sulfur subunit.
 0.966
SDL71050.1
Tat (twin-arginine translocation) pathway signal sequence.
 
 0.963
SDM79579.1
Formate dehydrogenase (quinone-dependent) catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.961
SDM79620.1
Formate dehydrogenase major subunit.
 
 0.955
SDL39271.1
Hypothetical protein.
   
 0.947
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.