STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM80070.1Protein of unknown function. (517 aa)    
Predicted Functional Partners:
SDM80105.1
Small GTP-binding protein domain-containing protein.
 
     0.953
SDM80182.1
Hypothetical protein.
 
     0.806
SDM59137.1
acyl-CoA thioesterase-1.
  
 0.803
SDL34961.1
Lysophospholipase L1.
  
 0.796
SDM80141.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
       0.773
SDM80225.1
Aldehyde:ferredoxin oxidoreductase.
       0.636
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.630
SDM83824.1
Hypothetical protein.
  
 0.624
SDL23578.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.589
SDM06512.1
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family.
 
  
  0.574
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.