STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM80523.1Type VI secretion system secreted protein VgrG. (859 aa)    
Predicted Functional Partners:
SDM00180.1
Type VI secretion system protein ImpH.
 
 
 0.953
SDL99996.1
Type VI secretion system protein ImpB.
 
  
 0.943
SDL99820.1
Type VI secretion system protein ImpK.
 
  
 0.888
SDM00105.1
Type VI secretion system protein.
 
  
 0.883
SDM00034.1
Type VI secretion system protein ImpC.
 
  
 0.881
SDL99956.1
Type VI secretion system protein VasJ.
 
  
 0.878
SDL99738.1
Type VI secretion system protein VasD.
 
  
 0.870
SDM00142.1
Type VI secretion system protein ImpG.
 
  
 0.850
SDM00262.1
Type VI secretion system secreted protein VgrG.
 
 
0.843
SDM00069.1
Type VI secretion system secreted protein Hcp.
 
  
 0.842
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.