STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM88753.1Hypothetical protein. (355 aa)    
Predicted Functional Partners:
SDM88800.1
TusA-related sulfurtransferase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.907
SDM88844.1
PAS domain S-box-containing protein.
 
     0.800
cysN
Bifunctional enzyme CysN/CysC; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
    0.767
SDM88884.1
Regulatory protein, Fis family.
       0.752
SDL91241.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
  
  
 0.547
SDM88925.1
Putative redox-active protein (C_GCAxxG_C_C).
 
     0.517
SDL47738.1
Hypothetical protein.
  
     0.512
SDM72466.1
Cache sensor signal transduction histidine kinase.
  
   
 0.490
SDM56018.1
Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
    0.489
SDM56119.1
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite.
   
    0.454
Your Current Organism:
Geoalkalibacter ferrihydriticus
NCBI taxonomy Id: 392333
Other names: DSM 17813, Desulfuromonas alkaliphilus, G. ferrihydriticus, Geoalkalibacter ferrihydriticus Zavarzina et al. 2007, VKM B-2401, strain Z-0531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.