Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM71155.1 | SDM89235.1 | SAMN05660860_03025 | SAMN05660860_03346 | Flagellar protein FliS. | Arsenite transporter, ACR3 family. | 0.416 |
SDM71155.1 | radA | SAMN05660860_03025 | SAMN05660860_00970 | Flagellar protein FliS. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.437 |
SDM89195.1 | SDM89235.1 | SAMN05660860_03345 | SAMN05660860_03346 | Nucleotide-binding universal stress protein, UspA family. | Arsenite transporter, ACR3 family. | 0.652 |
SDM89235.1 | SDM71155.1 | SAMN05660860_03346 | SAMN05660860_03025 | Arsenite transporter, ACR3 family. | Flagellar protein FliS. | 0.416 |
SDM89235.1 | SDM89195.1 | SAMN05660860_03346 | SAMN05660860_03345 | Arsenite transporter, ACR3 family. | Nucleotide-binding universal stress protein, UspA family. | 0.652 |
SDM89235.1 | SDM89437.1 | SAMN05660860_03346 | SAMN05660860_03351 | Arsenite transporter, ACR3 family. | Transcriptional regulator, ArsR family. | 0.400 |
SDM89235.1 | radA | SAMN05660860_03346 | SAMN05660860_00970 | Arsenite transporter, ACR3 family. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.400 |
SDM89235.1 | tatC | SAMN05660860_03346 | SAMN05660860_01341 | Arsenite transporter, ACR3 family. | Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.412 |
SDM89437.1 | SDM89235.1 | SAMN05660860_03351 | SAMN05660860_03346 | Transcriptional regulator, ArsR family. | Arsenite transporter, ACR3 family. | 0.400 |
radA | SDM71155.1 | SAMN05660860_00970 | SAMN05660860_03025 | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Flagellar protein FliS. | 0.437 |
radA | SDM89235.1 | SAMN05660860_00970 | SAMN05660860_03346 | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Arsenite transporter, ACR3 family. | 0.400 |
tatC | SDM89235.1 | SAMN05660860_01341 | SAMN05660860_03346 | Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | Arsenite transporter, ACR3 family. | 0.412 |