STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APU71581.1UPF0223 protein; Belongs to the UPF0223 family. (96 aa)    
Predicted Functional Partners:
APU71580.1
Hypothetical protein.
 
  
 0.850
APU71588.1
UPF0356 protein; Belongs to the UPF0356 family.
 
   
 0.749
APU71113.1
Hypothetical protein.
  
     0.706
APU71579.1
GTP-binding protein TypA/BipA-like protein.
       0.657
APU71385.1
Hypothetical protein.
  
     0.652
APU71194.1
UPF0291 protein.
  
     0.646
APU71324.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
     0.590
pdhC
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
       0.555
APU71627.1
Hypothetical protein.
  
     0.545
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
     0.522
Your Current Organism:
Lactobacillus crustorum
NCBI taxonomy Id: 392416
Other names: CCUG 53174, JCM 15951, L. crustorum, LMG 23699, LMG:23699, Lactobacillus crustorum Scheirlinck et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.