Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SES69500.1 | SET19536.1 | SAMN04488694_101145 | SAMN04488694_104195 | Hypothetical protein. | Hypothetical protein. | 0.571 |
SES69500.1 | fau-1 | SAMN04488694_101145 | SAMN04488694_103148 | Hypothetical protein. | Ribonuclease G or E; Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences. | 0.613 |
SES69500.1 | nusA | SAMN04488694_101145 | SAMN04488694_11119 | Hypothetical protein. | N utilization substance protein A; Participates in transcription termination. Belongs to the NusA family. | 0.463 |
SES69500.1 | pfdB | SAMN04488694_101145 | SAMN04488694_10141 | Hypothetical protein. | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 0.417 |
SES69500.1 | tfe | SAMN04488694_101145 | SAMN04488694_12814 | Hypothetical protein. | Transcription factor E (TFE); Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. [...] | 0.530 |
SET04956.1 | SET19536.1 | SAMN04488694_103200 | SAMN04488694_104195 | ATPase. | Hypothetical protein. | 0.564 |
SET04956.1 | hjc | SAMN04488694_103200 | SAMN04488694_106105 | ATPase. | Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. | 0.502 |
SET04956.1 | pfdB | SAMN04488694_103200 | SAMN04488694_10141 | ATPase. | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 0.525 |
SET04956.1 | tfe | SAMN04488694_103200 | SAMN04488694_12814 | ATPase. | Transcription factor E (TFE); Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. [...] | 0.629 |
SET19501.1 | SET19536.1 | SAMN04488694_104194 | SAMN04488694_104195 | Endonuclease-3. | Hypothetical protein. | 0.746 |
SET19501.1 | SET19566.1 | SAMN04488694_104194 | SAMN04488694_104196 | Endonuclease-3. | Predicted phosphohydrolase or phosphomutase, AlkP superfamily. | 0.440 |
SET19536.1 | SES69500.1 | SAMN04488694_104195 | SAMN04488694_101145 | Hypothetical protein. | Hypothetical protein. | 0.571 |
SET19536.1 | SET04956.1 | SAMN04488694_104195 | SAMN04488694_103200 | Hypothetical protein. | ATPase. | 0.564 |
SET19536.1 | SET19501.1 | SAMN04488694_104195 | SAMN04488694_104194 | Hypothetical protein. | Endonuclease-3. | 0.746 |
SET19536.1 | SET19566.1 | SAMN04488694_104195 | SAMN04488694_104196 | Hypothetical protein. | Predicted phosphohydrolase or phosphomutase, AlkP superfamily. | 0.636 |
SET19536.1 | fau-1 | SAMN04488694_104195 | SAMN04488694_103148 | Hypothetical protein. | Ribonuclease G or E; Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences. | 0.541 |
SET19536.1 | gch3 | SAMN04488694_104195 | SAMN04488694_11044 | Hypothetical protein. | GTP cyclohydrolase IIa; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | 0.593 |
SET19536.1 | hjc | SAMN04488694_104195 | SAMN04488694_106105 | Hypothetical protein. | Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. | 0.531 |
SET19536.1 | nusA | SAMN04488694_104195 | SAMN04488694_11119 | Hypothetical protein. | N utilization substance protein A; Participates in transcription termination. Belongs to the NusA family. | 0.510 |
SET19536.1 | pfdB | SAMN04488694_104195 | SAMN04488694_10141 | Hypothetical protein. | Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. | 0.545 |
page 1 of 3