STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET62420.1Hypothetical protein. (366 aa)    
Predicted Functional Partners:
SET62140.1
tRNA-archaeosine synthase.
 
  
  0.955
tgtA
Archaeosine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
  
  0.862
SES75964.1
Hypothetical protein; Belongs to the UPF0179 family.
  
     0.740
SEU05448.1
Uncharacterized coiled-coil protein, contains DUF342 domain.
  
     0.735
rpl40e
LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.715
SET26799.1
Transcriptional regulator, XRE family.
  
     0.714
SET93491.1
Replication factor A1.
  
     0.694
SET86770.1
Predicted transcriptional regulator.
  
     0.684
SEU07435.1
Predicted transcriptional regulator.
  
     0.683
SET93508.1
Hypothetical protein.
  
     0.681
Your Current Organism:
Haloterrigena hispanica
NCBI taxonomy Id: 392421
Other names: DSM 18328, H. hispanica, Haloterrigena hispanica Romano et al. 2007, Haloterrigena sp. FP1, strain FP1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.