STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEU06899.1Putative efflux protein, MATE family. (493 aa)    
Predicted Functional Partners:
SEU06885.1
DNA-binding transcriptional regulator, AcrR family.
     
 0.792
SEU06910.1
Hypothetical protein.
       0.773
SES68980.1
Farnesyl-diphosphate farnesyltransferase.
   
 
 0.651
SET94050.1
Phytoene synthase.
   
 
 0.651
tbp
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
    0.634
tbp-2
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
    0.634
gap
Glyceraldehyde 3-phosphate dehydrogenase (NAD(P)+).
  
  
 0.621
SES68655.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.562
SEU06875.1
DNA-binding transcriptional regulator, AcrR family.
     
 0.534
SEU06923.1
Transcription initiation factor TFIIB.
       0.522
Your Current Organism:
Haloterrigena hispanica
NCBI taxonomy Id: 392421
Other names: DSM 18328, H. hispanica, Haloterrigena hispanica Romano et al. 2007, Haloterrigena sp. FP1, strain FP1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.