Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LP43_0059 | aroB | LP43_0059 | LP43_0060 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.889 |
LP43_0059 | aroK | LP43_0059 | LP43_0061 | Hypothetical protein. | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.817 |
LP43_0059 | flgC | LP43_0059 | LP43_0605 | Hypothetical protein. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.666 |
LP43_0059 | guaA | LP43_0059 | LP43_0718 | Hypothetical protein. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.695 |
LP43_0059 | guaB | LP43_0059 | LP43_0719 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.693 |
LP43_0059 | nusA | LP43_0059 | LP43_1637 | Hypothetical protein. | Transcription termination protein NusA; Participates in both transcription termination and antitermination. | 0.656 |
LP43_0059 | pilM | LP43_0059 | LP43_0066 | Hypothetical protein. | Type IV pilus biogenesis protein PilM. | 0.614 |
LP43_0059 | pilO | LP43_0059 | LP43_0064 | Hypothetical protein. | Type IV pilus biogenesis protein PilO. | 0.669 |
LP43_0059 | pilP | LP43_0059 | LP43_0063 | Hypothetical protein. | Type IV pilus biogenesis protein PilP. | 0.665 |
LP43_0059 | pilQ | LP43_0059 | LP43_0062 | Hypothetical protein. | Type IV pilus biogenesis protein PilQ. | 0.665 |
aroB | LP43_0059 | LP43_0060 | LP43_0059 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Hypothetical protein. | 0.889 |
aroB | aroK | LP43_0060 | LP43_0061 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.999 |
aroB | pilM | LP43_0060 | LP43_0066 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Type IV pilus biogenesis protein PilM. | 0.540 |
aroB | pilO | LP43_0060 | LP43_0064 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Type IV pilus biogenesis protein PilO. | 0.540 |
aroB | pilP | LP43_0060 | LP43_0063 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Type IV pilus biogenesis protein PilP. | 0.607 |
aroB | pilQ | LP43_0060 | LP43_0062 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Type IV pilus biogenesis protein PilQ. | 0.651 |
aroK | LP43_0059 | LP43_0061 | LP43_0059 | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | Hypothetical protein. | 0.817 |
aroK | aroB | LP43_0061 | LP43_0060 | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |
aroK | guaA | LP43_0061 | LP43_0718 | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.506 |
aroK | guaB | LP43_0061 | LP43_0719 | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.509 |
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