Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilPType IV pilus biogenesis protein PilP. (175 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus biogenesis protein PilQ.
 
 
 0.997
pilN
Type IV pilus biogenesis protein PilN.
 
  
 0.996
pilO
Type IV pilus biogenesis protein PilO.
 
  
 0.994
pilM
Type IV pilus biogenesis protein PilM.
 
  
 0.975
pilW
Type IV fimbrial biogenesis protein PilW.
  
  
 0.842
LP43_2224
Type IV pilus biogenesis protein PilZ.
  
   
 0.831
pilV
Type IV fimbrial biogenesis protein PilV.
  
  
 0.817
pilY
Type IV fimbrial biogenesis protein PilY1.
  
  
 0.786
LP43_0248
Hypothetical protein.
  
     0.773
pilX
Type IV fimbrial biogenesis protein PilX.
  
  
 0.742
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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