Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilMType IV pilus biogenesis protein PilM. (352 aa)    
Predicted Functional Partners:
pilN
Type IV pilus biogenesis protein PilN.
 
 0.999
pilO
Type IV pilus biogenesis protein PilO.
 
 
 0.996
pilQ
Type IV pilus biogenesis protein PilQ.
 
 
 0.995
pilP
Type IV pilus biogenesis protein PilP.
 
  
 0.975
LP43_0248
Hypothetical protein.
  
 
   0.924
pilC
Type IV fimbrial assembly protein PilC.
 
 
 
 0.902
pilE
Type IV pilus biogenesis protein PilE.
 
   
 0.879
LP43_2224
Type IV pilus biogenesis protein PilZ.
  
   
 0.857
LP43_2411
Twitching motility protein PilT.
 
   
 0.852
pilB
Type IV fimbrial assembly, ATPase PilB.
 
 
 
 0.838
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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