Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_0090Mobile element protein. (442 aa)    
Predicted Functional Partners:
LP43_0089
Mercuric resistance operon regulatory protein.
 
     0.746
LP43_0085
Mercuric ion reductase.
 
     0.644
LP43_0092
Cd(II)/Pb(II)-responsive transcriptional regulator.
 
     0.614
LP43_0088
Mercuric transport protein MerT.
 
     0.596
merP
Periplasmic mercury(+2) binding protein; Involved in mercury resistance. Acts as a mercury scavenger that specifically binds to a mercuric ion in the periplasm and probably passes it to the cytoplasmic mercuric reductase MerA via the mercuric transport protein MerT.
 
     0.595
LP43_0094
Cobalt-zinc-cadmium resistance protein CzcD.
 
     0.572
LP43_2499
Hypothetical protein.
  
     0.571
LP43_0086
Hypothetical protein.
       0.437
LP43_2122
Hypothetical protein.
  
     0.405
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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