Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0110Copper resistance protein B. (249 aa)    
Predicted Functional Partners:
LP43_0109
Multicopper oxidase.
 
  
 0.997
LP43_0111
Amino acid permease.
 
     0.793
LP43_0112
Cytochrome c family protein.
 
     0.767
LP43_0106
Heavy metal sensor histidine kinase; Member of a two-component regulatory system.
 
   
 0.637
LP43_0108
Hypothetical protein.
       0.615
LP43_1932
Putative enzyme of the cupin superfamily.
   
    0.557
LP43_0878
Hypothetical protein.
  
     0.501
merP
Periplasmic mercury(+2) binding protein; Involved in mercury resistance. Acts as a mercury scavenger that specifically binds to a mercuric ion in the periplasm and probably passes it to the cytoplasmic mercuric reductase MerA via the mercuric transport protein MerT.
 
   
 0.499
LP43_2074
Lead, cadmium, zinc and mercury transporting ATPase/Copper-translocating P-type ATPase.
     
 0.492
LP43_0968
CopG protein.
 
   
 0.482
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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