Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_0115Hypothetical protein. (152 aa)    
Predicted Functional Partners:
LP43_0116
Hypothetical protein.
 
     0.889
LP43_0118
Hypothetical protein.
 
     0.741
LP43_0117
Hypothetical protein.
 
     0.671
LP43_0124
Heavy metal RND efflux outer membrane protein, CzcC family.
 
     0.574
LP43_2505
Hypothetical protein.
  
     0.526
LP43_0114
Permease of the drug/metabolite transporter (DMT) superfamily.
  
     0.502
LP43_1918
Hypothetical protein.
  
     0.445
LP43_1884
Hypothetical protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.
  
     0.444
oadG
Hypothetical protein; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
  
     0.440
LP43_0293
Pentapeptide repeat domain protein.
  
     0.423
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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