Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0123Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (492 aa)    
Predicted Functional Partners:
LP43_0122
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.989
LP43_0124
Heavy metal RND efflux outer membrane protein, CzcC family.
 
 0.962
LP43_0102
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.948
LP43_0777
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.928
LP43_0096
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.926
LP43_0104
Heavy metal RND efflux outer membrane protein, CzcC family.
 
 0.897
LP43_2455
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.866
LP43_0779
Heavy metal RND efflux outer membrane protein, CzcC family.
 
 0.814
LP43_0098
Heavy metal RND efflux outer membrane protein, CzcC family.
 
 0.772
LP43_0810
Type I secretion outer membrane protein, TolC precursor.
  
 0.739
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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