Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0132Ser/Thr protein phosphatase family protein. (251 aa)    
Predicted Functional Partners:
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
 0.912
LP43_0281
Hypothetical protein.
    
  0.826
LP43_0780
Hypothetical protein.
    
  0.786
LP43_0131
Hypothetical protein.
       0.681
LP43_1142
Ser/Thr protein phosphatase family protein.
 
  
 
0.627
LP43_0595
Hypothetical protein.
    
 0.548
LP43_2202
5'-nucleotidase.
 
  
  0.527
LP43_0133
Hypothetical protein.
       0.510
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
  0.498
LP43_1430
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
    
  0.498
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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