Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0208Metallo-beta-lactamase superfamily protein. (209 aa)    
Predicted Functional Partners:
LP43_0209
Branched-chain amino acid ABC-type transport system, permease component.
       0.608
LP43_0207
Hypothetical protein.
       0.594
LP43_0210
Permease of the drug/metabolite transporter (DMT) superfamily.
  
    0.557
LP43_0279
Transcriptional regulatory protein.
    
   0.460
LP43_0212
Hypothetical protein.
    
  0.443
LP43_0211
Transcriptional regulator, HxlR family.
       0.430
LP43_1699
Hypothetical protein.
   
    0.411
groES
Heat shock protein 60 family co-chaperone GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
    
   0.403
moaD
Molybdenum cofactor biosynthesis protein MoaD.
  
  
  0.400
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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