Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0267Pseudoazurin. (255 aa)    
Predicted Functional Partners:
LP43_0109
Multicopper oxidase.
   
  0.764
LP43_0266
Hypothetical protein.
       0.566
LP43_1870
Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.513
LP43_2317
Hypothetical protein.
  
     0.496
LP43_2153
Hypothetical protein.
  
     0.448
LP43_0026
Phosphate-specific outer membrane porin OprP/Pyrophosphate-specific outer membrane porin OprO.
  
     0.434
LP43_1852
Zn-ribbon-containing protein.
  
     0.427
LP43_2010
Hypothetical protein.
  
     0.421
LP43_0752
Hypothetical protein.
  
     0.416
LP43_1508
Hypothetical protein.
  
     0.410
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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