Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
LP43_0287Formylmethanofuran hydrolase subunit B. (424 aa)    
Predicted Functional Partners:
LP43_0284
Formylmethanofuran hydrolase subunit C.
 
 
 0.998
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
 
 0.998
LP43_0286
Formylmethanofuran hydrolase subunit A.
 
 0.998
LP43_1948
Formylmethanofuran hydrolase subunit A.
 
 0.991
LP43_0835
Iron-sulfur cluster-binding protein.
  
  0.866
LP43_0842
Tungsten-containing formate dehydrogenase beta subunit.
     
  0.828
LP43_0838
Formate dehydrogenase-O, major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  0.819
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
  
  0.800
mgsB
N-methyl glutamate synthase subunit B.
  
  0.800
LP43_0053
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein; Belongs to the HisA/HisF family.
 
   
 0.798
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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